De Ronne, M., Labbe, C., Lebreton, A., Sonah, H., Deshmukh, R., Jean, M., Belzile, F., O'Donoughue, L., Belanger, R. 2019. Integrated QTL mapping, gene expression and nucleotide variation analyses to investigate complex quantitative traits: a case study with the soybean-Phytophthora sojae interaction. Plant Biothechnology Journal.

Tardivel, A., Torkamaneh, D., Lemay, M.-A., Belzile, F. and O'Donoughue, L.S. 2019. A systematic gene-centric approach to define haplotypes and identify alleles on the basis of dense single nucleotide polymorphism datasets. The Plant Genome.

Masonbrink, R., Maier, T. R., Muppirala, U., Seetharam, A. S., Lord, E., Juvale, P. S., Schmutz, J., Johnson, N.T., Korkin, D., Mitchum, M. G., Mimee, B., Eves-van den Akker, S., Hudson, M., Severin, A.J., and Baum, T.J. 2019. The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes. BMC Genomics. 

Arsenault-Labrecque, G., Sonah, H., Lebreton, A., Labbé, C., Marchand, G., Xue, A., Belzile, F., Knaus, B.J., Grünwald, N.J., Bélanger, R. 2018. Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates. BMC Biology.

Gendron St-Marseille, A-F., Lord, E., Véronneau, P-Y., Brodeur, J., Mimee, B. 2018. Genome Scans Reveal Homogenization and Local Adaptations in Populations of the Soybean Cyst Nematode. Frontiers in Plant Science.

Copley, T., Duceppe, M-O., O'Donoughue, L. 2018. Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction line. BMC Genomics.

Torkamaneh, D., Boyle, B. and Belzile, F. 2018. Efficient genome-wide genotyping strategies and data integration in crop plants. Theoretical and Applied Genetics.

Lebreton, A., Labbe, C., De Ronne, M., Xue, A., Marchand, G. and Bélanger, R., 2018. Development of a simple hydroponic assay to study vertical and horizontal resistance of soybean and pathotypes of Phytophthora sojae, Plant Disease.

Torkamaneh, D., Laroche, J., Tardivel, A.,  O’Donoughue, L., Cober, E., Rajcan, I. and Belzile, F. 2017. Comprehensive Description of Genome-Wide Nucleotide and Structural Variation in Short-Season Soybean. Plant Biotechnology Journal.

Torkamaneh, D., Laroche, J., Bastien, M., Abed, A. and Belzile, F., 2017. Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data. BMC Bioinformatics. 

Torkamaneh, D., Laroche, J., and Belzile, F. 2016. Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies. PLoS ONE.