Manuscripts

Bruce, R. W., Torkamaneh, D., Grainger, C. M., Belzile, F., Eskandari, M., Rajcan, I. 2020. Genome-wide genetic diversity is maintained through decades of soybean breeding in Canada. Theoretical and Applied Genetics.

Torkamaneh, D., Boyle, B.,St-Cyr, J., Légaré, G., Pomerleau, S., Belzile, F. 2020. NanoGBS: A Miniaturized Procedure for GBS Library Preparation. Frontiers in Genetics.

Bruce, R. W., Torkamaneh, D., Grainger, C. M., Belzile, F., Eskandari, M., Rajcan, I. 2020. Haplotype diversity underlying quantitative traits in Canadian soybean breeding germplasm. Theoretical and Applied Genetics.

Dussault-Benoit, C., Arsenault-Labrecque, G., Sonah, H., Belzile, F., Belanger, R. 2020. Discriminant haplotypes of avirulence genes of Phytophthora sojae lead to a molecular assay to predict phenotypes. Molecular Plant Pathology.

Rasoolizadeh, A., Santhanam, P., Labbe, C., Matha Shivaraj, S., Germain, H., Belanger, R. 2020. Silicon influences the localization and expression of Phytophthora sojae effectors in interaction with soybean. Journal of Experimental Botany.

Boudhrioua, c., Bastien, M., Torkamaneh, D., Belzile, F. 2020. Genome-wide association mapping of Sclerotinia sclerotiorum resistance in soybean using whole-genome resequencing data. BMC Plant Biology.

Torkamaneh, D., Laroche, J., Valliyodan, B., O’Donoughue, L., Cober, E., Rajcan, I., Vilela Abdelnoor, R., Sreedasyam, A., Schmutz, J., Nguyen, H. T. and Belzile, F. 2020. Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics. Plant Biotechnology Journal. 

Torkamaneh, D., Laroche, J., Belzile, F. 2020. Fast-GBS v2.0: an analysis toolkit for genotyping-by-sequencing data. Genome. 

Audette, C., Belanger, R., Mimee, B. 2020. Coinfection of soybean plants with Phytophthora sojae and soybean cyst nematode does not alter the efficacy of resistance genes. Plant Pathology. 

Boucher St-Amour, V. T., Mimee, B., Torkamaneh, D., Jean, M., Belzile, F., O'Donoughue, L.S. 2020. Characterizing resistance to soybean cyst nematode in PI 494182, an early maturing soybean accession. Crop Science. 

De Ronne, M., Labbe, C., Lebreton, A., Sonah, H., Deshmukh, R., Jean, M., Belzile, F., O'Donoughue, L., Belanger, R. 2019. Integrated QTL mapping, gene expression and nucleotide variation analyses to investigate complex quantitative traits: a case study with the soybean-Phytophthora sojae interaction. Plant Biothechnology Journal.

Tardivel, A., Torkamaneh, D., Lemay, M.-A., Belzile, F. and O'Donoughue, L.S. 2019. A systematic gene-centric approach to define haplotypes and identify alleles on the basis of dense single nucleotide polymorphism datasets. The Plant Genome.

Masonbrink, R., Maier, T. R., Muppirala, U., Seetharam, A. S., Lord, E., Juvale, P. S., Schmutz, J., Johnson, N.T., Korkin, D., Mitchum, M. G., Mimee, B., Eves-van den Akker, S., Hudson, M., Severin, A.J., and Baum, T.J. 2019. The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes. BMC Genomics. 

Arsenault-Labrecque, G., Sonah, H., Lebreton, A., Labbé, C., Marchand, G., Xue, A., Belzile, F., Knaus, B.J., Grünwald, N.J., Bélanger, R. 2018. Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates. BMC Biology.

Gendron St-Marseille, A-F., Lord, E., Véronneau, P-Y., Brodeur, J., Mimee, B. 2018. Genome Scans Reveal Homogenization and Local Adaptations in Populations of the Soybean Cyst Nematode. Frontiers in Plant Science.

Copley, T., Duceppe, M-O., O'Donoughue, L. 2018. Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction line. BMC Genomics.

Torkamaneh, D., Boyle, B. and Belzile, F. 2018. Efficient genome-wide genotyping strategies and data integration in crop plants. Theoretical and Applied Genetics.

Lebreton, A., Labbe, C., De Ronne, M., Xue, A., Marchand, G. and Bélanger, R., 2018. Development of a simple hydroponic assay to study vertical and horizontal resistance of soybean and pathotypes of Phytophthora sojae, Plant Disease.

Torkamaneh, D., Tardivel, A., Boudhrioua, C., Laroche, J., O’Donoughue, L. and Belzile, F. 2017. Comprehensive Description of Genome-Wide Nucleotide and Structural Variation in Short-Season Soybean. Plant Biotechnology Journal.

Torkamaneh, D., Laroche, J., Bastien, M., Abed, A. and Belzile, F., 2017. Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data. BMC Bioinformatics. 

Torkamaneh, D., Laroche, J., and Belzile, F. 2016. Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies. PLoS ONE.